About Me

Download Curriculum Vitae

My name is Muhammad Arif and I'm from Indonesia. Currently I'm residing in Bethesda, MD, USA, together with my small family (photo above :D).

Personal Statement (Excerpt from Biosketch)
As a systems biology expert working among experimental biologists, chemists, and clinicians, my key role is to navigate the research with data-driven approaches. This perfectly aligns with my main interest in developing systems biology approaches and algorithms, especially machine learning and biological networks, as hypothesis-free tools to facilitate basic, translational, and clinical research for human diseases. Specifically, I am interested in the integration of multi-omics data and studying crosstalk between different organs in responding to complex diseases. Since 2021, I joined the National Institutes of Health (NIH), USA, as a postdoctoral fellow, jointly appointed by the the Section on Fibrotic Disorders (SFD) and the Laboratory of Cardiovascular Physiology and Tissue Injury (LCPTI). My research focus is to utilize big multi-omics data, from tissue and single-cell levels, for the discovery of biomarkers and therapeutic targets in progressive diseases and conditions, including aging and pulmonary fibrosis (PF), and facilitate pre- to clinical translational process. By analyzing multi-omics data with network and machine learning analyses, I have recently identified candidate treatment targets to attenuate the effect of aging on the heart and liver. In my other project, I have also identified progression signatures of PF and synergistic drug targets to be combined with a known PF treatment target, Cannabinoid Receptor 1. Both projects were recently published in two leading journals in the area, Advanced Science and GeroScience. Currently, we are working on several other data-driven projects, including multi-organ interactions in aging processes and the development of new multi-omics diagnostic tools in PF, specifically in Hermansky-Pudlak Syndrome patients.

My academic experiences have exposed me to the full pre- and clinical experiments cycle. After finishing my doctoral study in a fully computational lab, I decided to join fully experimental labs for my postdoctoral research. Here, I am also learning the processes in experimental pre-clinical research, from sample preparation, in-vivo and in-vitro experiments, to data acquisition. This experience has been insightful and allowed me to fully understand the entire data life cycle, together with its associated difficulties, from its very first experimental setup to downstream analysis.

Research Interests and Experiences
My interests are in the development and implementation of machine learning and network analysis methods in biological context. I have been involved in multiple projects including multi-omics integration, biological network (co-expression and regulatory network), single-cell transcriptional analysis, metabolic modelling and proteomics analysis. Some of my notable works can be found in the Publication tab, including integration of multi-omics data, multi-tissue analysis on heart attack, biological network database, and my PhD Thesis.

On top of research activity, I'm very interested as well in teaching (both introductory and advanced level) and doing outreach programs. If you have any collaboration for research or teaching, or even side projects, please drop me a message.

PhD Education
I'm a PhD graduate from KTH Royal Institute of Technology and also Science for Life Laboratory (SciLifeLab) under the supervision of Professor Adil Mardinoglu and Professor Mathias Uhlén. I'm part of Systems Medicine group at SciLifeLab. I succesfully defended my PhD on 11 June 2021. My PhD project was focusing on the use of systems biology to understand the underlying mechanism of human diseases.

Publications

Last Update: 23 April 2024
Google Scholar: Google Scholar ResearcherID: ResearcherID

Publications By Year [# of Publications]:
2024 [3 Peer-reviewed ]
2023 [8] | 2022 [8] | 2021 [21] | 2020 [5] | 2019 [4] | 2018 [4] | 2017 [1] | 2016 [1]
(*: First/Co-First Author)

Key Publications

An Integrative Multiomics Framework for Identification of Therapeutic Targets in Pulmonary Fibrosis
Advanced Science
M Arif*, A Basu*, K Wolf, J Park, L Pommerolle, M Behee, B Gochuico, R Cinar
Data-driven transcriptomics analysis identifies PCSK9 as a novel key regulator in liver aging
GeroScience
M Arif*, C Matyas, P Mukhopadhyay, B Yokus, E Trojnar, J Paloczi, B Paes-Leme, S Zhao, F Lohoff, G Haskó, P Pacher
Multi-omics analysis reveals the impact of microbiota on host metabolism in hepatic steatosis
Advanced Science
M Zeybel*, M Arif*, X Li, O Altay, M Shi, M Akyildiz, B Saglam, MG Gonenli, B Yigit, B Ulukan, D Ural, S Shoaie, H Turkez, J Nielsen, C Zhang, M Uhlén, J Borén, A Mardinoglu
Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction
eLife
M Arif*, M Klevstig*, R Benfeitas, S Doran, H Turkez, M Uhlen, M Clausen, J Wikström, C Zhang, M Levin, A Mardinoglu, J Boren
Press Release: Map of metabolic changes after heart attack holds clues to recovery
Highlights: Heart Attack: Working together (eLife: Insights)
iNetModels 2.0: an interactive visualization and database of multi-omics data
Platform Access: https://inetmodels.com
Nucleic acid Research
M Arif*, C Zhang*, X Li, C Güngör, B Çakmak, M Arslantürk, A Tebani, B Özcan, O Subaş, W Zhou, B Piening, H Turkez, L Fagerberg, N Price, L Hood, M Snyder, J Nielsen, M Uhlen, A Mardinoglu
Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients
Molecular Systems Biology
M Zeybel*, O Altay*, M Arif*, X Li, H Yang, C Fredolini, M Akyildiz, B Saglam, MG Gonenli, D Ural, W Kim, JM Schwenk, C Zhang, S Shoaie, J Nielsen, M Uhlen, J Boren, A Mardinoglu

2024

Chronic Alcohol Intake Compromises Lung Immunity by Altering Immunometabolism in Humans and Mouse Models
American Journal of Respiratory Cell and Molecular Biology
L Pommerolle, M Arif*, M Behee, C Appolonia, A Basu, K Wolf, CN Zawatsky, N Johnson, O Rivellini, J Park, R Cinar
Remodeling of the human skeletal muscle proteome found after long-term endurance training but not after strength training
iScience
E Emanuelsson, M Arif, S Reitzner, S Perez, M Lindholm, A Mardinoglu, C Daub, C Sundberg, M Chapman
Renal Mitochondrial ATP Transporter Ablation Ameliorates Obesity-Induced Chronic Kidney Disease
Journal of the American Society of Nephrology
A Permyakova, S Hamad, L Hinden, S Baraghithy, A Kogot-Levin, O Yosef, O Shalev, M Tripathi, H Amal, A Basu, M Arif, R Cinar, G Kunos, M Berger, G Leibowitz, J Tam
Molecular profiling of high-level athlete skeletal muscle after acute endurance or resistance exercise–A systems biology approach
Molecular Metabolism
S Reitzner, E Emanuelsson, M Arif, B Kaczkowski, A Kwon, A Mardinoglu, E Arner, M Chapman, C Sundberg

2023

Peer-Reviewed

Combined metabolic activators improve cognitive functions in Alzheimer’s disease patients: a randomised, double-blinded, placebo-controlled phase-II trial
Translational Neurodegeneration
B Yulug, O Altay, X Li, L Hanoglu, S Cankaya, S Lam, H Velioglu, H Yang, E Coskun, E Idil, R Nogaylar, A Ozsimsek, C Bayram, I Bolat, S Oner, O Tozlu, M Arslan, A Hacimuftuoglu, S Yildirim, M Arif, S Shoaie, C Zhang, J Nielsen, H Turkez, J Borén, M Uhlén, A Mardinoglu
Functional Pdgfra fibroblast heterogeneity in normal and fibrotic mouse lung
JCI insight
C Trempus, B Papas, M Sifre, C Bortner, E Scappini, C Tucker, X Xu, K Johnson, L Deterding, J Williams, D Johnson, J Li, D Sutton, C Ganta, D Mahapatra, M Arif, A Basu, L Pommerolle, R Cinar, A Perl, S Garantziotis
Data-driven transcriptomics analysis identifies PCSK9 as a novel key regulator in liver aging
GeroScience
M Arif*, C Matyas, P Mukhopadhyay, B Yokus, E Trojnar, J Paloczi, B Paes-Leme, S Zhao, F Lohoff, G Haskó, P Pacher
PCSK9, a promising novel target for age-related cardiovascular dysfunction
Basic to Translational Science
C Matyas, E Trojnar, S Zhao, M Arif, P Mukhopadhyay, A Kovacs, A Fabian, M Tokodi, Z Bagyura, B Merkely, L Kohidai, E Lajko, A Takacs, Y He, B Gao, J Paloczi, F Lohoff, G Haskó, W Ding, P Pacher
Cardiomyocyte-specific PCSK9 deficiency compromises mitochondrial bioenergetics and heart function
Cardiovascular Research
M Laudette, M Lindbom, M Arif, M Cinato, M Ruiz, S Doran, A Miljanovic, M Rutberg, L Andersson, M Klevstig, M Henricsson, P Bergh, E Bollano, N Aung, J Smith, M Pilon, T Hyötyläinen, M Orešič, R Perkins, A Mardinoglu, M Levin, J Borén
An Integrative Multiomics Framework for Identification of Therapeutic Targets in Pulmonary Fibrosis
Advanced Science
M Arif*, A Basu*, K Wolf, J Park, L Pommerolle, M Behee, B Gochuico, R Cinar
Cardiac Plin5 interacts with SERCA2 and promotes calcium handling and cardiomyocyte contractility
Life Science Alliance
M Cinato, I Mardani, A Miljanovic, C Drevinge, M Laudette, E Bollano, M Henricsson, J Tolö, M Thorbrügge, M Levin, M Lindbom, M Arif, P Pacher, L Andersson, C Olofsson, J Borén, M Levin
Cardiomyocyte-specific PCSK9 deficiency compromises mitochondrial bioenergetics and heart function
Cardiovascular Research
M Laudette, M Lindbom, M Arif, M Cinato, M Ruiz, S Doran, A Miljanovic, M Rutberg, L Andersson, M Klevstig, M Henricsson, P Bergh, E Bollano, N Aung, J Smith, M Pilon, T Hyötyläinen, M Orešič, R Perkins, A Mardinoglu, M Levin, J Borén

2022

Peer-Reviewed

Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositioning
EBioMedicine
C Zhang, M Shi, W Kim, M Arif, M Klevstig, X Li, H Yang, C Bayram, I Bolar, Ö Tozlu, A Hacimuftuoglu, S Yildirim, J Sebhaoui, S Iqbal, Y Wei, X Shi, J Nielsen, H Turkez, M Uhlen, J Boren, A Mardinoglu
MRI characterization of skeletal muscle size and fatty infiltration in long‐term trained and untrained individuals
Physiological Reports
E Emanuelsson, D Berry, S Reitzner, M Arif, A Mardinoglu, T Gustafsson, S Ward, CJ Sundberg, M Chapman
Multi-omics analysis reveals the impact of microbiota on host metabolism in hepatic steatosis
Advanced Science
M Zeybel*, M Arif*, X Li*, O Altay, M Shi, M Akyildiz, B Saglam, MG Gonenli, B Yigit, B Ulukan, D Ural, S Shoaie, H Turkez, J Nielsen, C Zhang, M Uhlén, J Borén, A Mardinoglu
Cannabinoid receptor 2 activation alleviates diabetes-induced cardiac dysfunction, inflammation, oxidative stress, and fibrosis
GeroScience
M Rajesh, P Mukhopadhyay, S Bátkai, M Arif, ZV Varga, C Mátyás, J Paloczi, A Lehocki, G Haskó, P Pacher
Multiomics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity
Cell Systems
AT Ambikan, H Yang, S Krishnan, S Svensson-Akusjärvi, S Gupta, M Lourda, M Sperk, M Arif, C Zhang, H Nordqvist, SM Ponnan, A Sönnerborg, CJ Treutiger, L O’Mahony, A Mardinoglu, R Benfeitas, U Neogi
Machine Learning Analysis Reveals Biomarkers for the Detection of Neurological Diseases
Frontiers in molecular neuroscience
S Lam, M Arif, X Song, M Uhlén, A Mardinoglu
Genome-wide annotation of protein-coding genes in pig
BMC biology
M Karlsson, E Sjöstedt, P Oksvold, Å Sivertsson, J Huang, MB Álvez, M Arif, X Li, L Lin, J Yu, T Ma, F Xu, P Han, H Jiang, A Mardinoglu, C Zhang, K Feilitzen, X Xu, J Wang, H Yang, L Bolund, W Zhong, L Fagerberg, C Lindskog, F Pontén, J Mulder, Y Luo, M Uhlen

Pre-Print (Not Peer Reviewed Yet)

Hexokinase 1b is a novel target for Non–small-cell lung cancer
BioRxiv
Y Yozgat, E Karakoc, O Sahin, S Cimen, WM Rabeh, MS Aydin, A Mardinoglu, I Gursel, A Cakir, O Sensoy, EM Ozdemir, Y Bayrak, MZ Gunluoglu, O Saatci, J Jabbar, JC Ferreira, MD Aslan, M Yildirim, S Mansoor, BE Kerman, Z Aladag, W Kim, M Arif, E Vatandaslar, OE Tok, Z Dogru, AGO Demir, TC Yildirim, I Yozgat, S Senturk, G Ozturk, MA Cevher

2021

Peer-Reviewed

Revealing the Molecular Mechanisms of Alzheimer’s Disease Based on Network Analysis
International journal of molecular sciences
A Bayraktar, S Lam, O Altay, X Li, M Yuan, C Zhang, M Arif, H Turkez, M Uhlén, S Shoaie, A Mardinoglu
Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients
Molecular Systems Biology
M Zeybel*, O Altay*, M Arif*, X Li, H Yang, C Fredolini, M Akyildiz, B Saglam, MG Gonenli, D Ural, W Kim, JM Schwenk, C Zhang, S Shoaie, J Nielsen, M Uhlen, J Boren, A Mardinoglu
Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms
EBioMedicine
W Zhong, O Altay, M Arif, F Edfors, L Doganay, A Mardinoglu, M Uhlen, L Fagerberg
Systems analysis reveals ageing-related perturbations in retinoids and sex hormones in Alzheimer's and Parkinson's diseases
Biomedicines
S Lam, N Hartmann, R Benfeitas, C Zhang, M Arif, H Turkez, M Uhlen, C Englert, RD Knight, A Mardinoglu
A network-based approach reveals the dysregulated transcriptional regulation in non-alcohol fatty liver disease
iScience
H Yang, M Arif, Y Meng, X Li, KE Shong, H Turkez, J Nielsen, M Uhlén, J Borén, C Zhang, A Mardinoglu
Glucosylceramide synthase deficiency in the heart compromises β1-adrenergic receptor trafficking
European Heart Journal
L Andersson, M Cinato, I Mardani, A Miljanovic, M Arif, A Koh, M Lindbom, M Laudette, E Bollano, E Omerovic, M Klevstig, M Henricsson, P Fogelstrand, K Swärd, M Ekstrand, M Levin, J Wikström, S Doran, T Hyötyläinen, L Sinisalu, M Orešič, Å Tivesten, M Adiels, MO Bergo, R Proia, A Mardinoglu, A Jeppsson, J Borén, MC Levin
A single–cell type transcriptomics map of human tissues
Science Advances
M Karlsson, C Zhang, L Méar, W Zhong, A Digre, B Katona, E Sjöstedt, L Butler, J Odeberg, P Dusart, F Edfors, P Oksvold, K Feilitzen, M Zwahlen, M Arif, O Altay, X Li, M Ozcan, A Mardonoglu, L Fagerberg, J Mulder, Y Luo, F Ponten, M Uhlén, C Lindskog
Combined Metabolic Activators accelerates recovery in mild-to-moderate COVID-19
Advanced Science
O Altay*, M Arif*, X Li*, H Yang, M Aydın, G Alkurt, W Kim, D Akyol, C Zhang, G Dinler-Doganay, H Turkez, S Shoaie, J Nielsen, J Borén, O Olmuscelik, L Doganay, M Uhlén, A Mardinoglu
Press Release: Covid-19 patients recover faster with metabolic activator treatment, study shows
Stratification of patients with clear cell renal cell carcinoma to facilitate drug repositioning
iScience
X Li, W Kim, K Juszczak, M Arif, Y Sato, H Kume, S Ogawa, H Turkez, J Boren, J Nielsen, M Uhlen, C Zhang, A Mardinoglu
Systems and Network-based Approaches to Complex Metabolic Diseases
KTH Royal Institute of Technology
M Arif (Doctoral Thesis)
Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction
eLife
M Arif*, M Klevstig*, R Benfeitas, S Doran, H Turkez, M Uhlen, M Clausen, J Wikström, C Zhang, M Levin, A Mardinoglu, J Boren
Press Release: Map of metabolic changes after heart attack holds clues to recovery
Highlighted in: Heart Attack: Working together (eLife: Insights)
Integrative study of diet-induced mouse models of NAFLD identifies PPARα as a sexually dimorphic drug target
Gut
S Smati, A Polizzi, A Fougerat, S Ellero-Simatos, Y Blum, Y Lippi, M Régnier, A Laroyenne, M Huillet, M Arif, C Zhang, F Lasserre, A Marrot, TA Saati, JH Wan, C Sommer, C Naylies, A Batut, C Lukowicz, T Fougeray, B Tramunt, P Dubot, L Smith, J Bertrand-Michel, N Hennuyer, JP Pradere, B Staels, R Burcelin, F Lenfant, JF Arnal, T Levade, L Gamet-Payrastre, S Lagarrigue, N Loiseau, S Lotersztajn, C Postic, W Wahli, C Bureau, M Guillaume, A Mardinoglu, A Montagner, P Gourdy, H Guillou
iNetModels 2.0: an interactive visualization and database of multi-omics data
Nucleic acid Research
Platform Access: https://inetmodels.com
M Arif*, C Zhang*, X Li, C Güngör, B Çakmak, M Arslantürk, A Tebani, B Özcan, O Subaş, W Zhou, B Piening, H Turkez, L Fagerberg, N Price, L Hood, M Snyder, J Nielsen, M Uhlen, A Mardinoglu
Molecular pathways behind acquired obesity: adipose tissue and skeletal muscle multiomics in monozygotic twin pairs discordant for BMI
Cell Reports Medicine
BW Kolk, S Saari, A Lovric, M Arif, M Alvarez, A Ko, Z Miao, N Sahebekhtiari, M Muniandy, S Heinonen, A Oghabian, R Jokinen, S Jukarainen, A Hakkarainen, J Lundbom, J Kuula, PH Groop, T Tukiainen, N Lundbom, A Rissanen, J Kaprio, EG Williams, N Zamboni, A Mardinoglu, P Pajukanta, KH Pietiläinen
Multi-omics approaches for revealing the complexity of cardiovascular disease
Briefings in Bioinformatics
S Doran, M Arif, S Lam, A Bayraktar, H Turkez, M Uhlen, J Boren, A Mardinoglu
Spatiotemporal dissection of the cell cycle with single-cell proteogenomics
Nature
D Mahdessian, AJ Cesnik, C Gnann, F Danielsson, L Stenström, M Arif, C Zhang, R Shutten, A Bäckström, P Thul, NH Cho, O Carja, M Uhlén, A Mardinoglu, C Stadler, C Lindskog, B Ayoglu, MD Leonetti, F Pontén, D Sullivan, E Lundberg
Discovery of functional alternatively spliced PKM transcripts in human cancers
Cancers
X Li, W Kim, M Arif, C Gao, A Hober, D Kotol, L Strandberg, B Forsström, Å Sivertsson, P Oksvold, H Turkez, M Grøtli, Y Sato, H Kume, S Ogawa, J Boren, J Nielsen, M Uhlen, C Zhang, A Mardinoglu

Pre-Print (Not Peer Reviewed Yet)

GutMicroNet: an interactive platform for gut microbiome interaction exploration
Platform Access: https://gutmicro.net
bioRxiv
M Arif*, T Portlock*, C Güngör, E Koç, B Özcan, O Subaş, B Çakmak, H Turkez, M Uhlén, A Mardinoglu, S Shoaie
Combined Metabolic Activators Improves Cognitive Functions in Alzheimer's Disease
medRxiv
B Yulug, O Altay, X Li, L Hanoglu, S Cankaya, S Lam, H Yang, E Coskun, E İdil, R Nogaylar, C Bayram, I Bolat, S ONER, O TOZLU, ME Arslan, A HACIMUFTUOGLU, S YILDIRIM, M Arif, C ZHANG, J NIELSEN, H TURKEZ, J BOREN, M UHLEN, A MARDINOGLU
Combined Metabolic Activators Improve Cognitive Functions without Altering Motor Scores in Parkinson's Disease
medRxiv
B Yulug, O Altay, X Li, L Hanoglu, S Cankaya, S Lam, H Yang, E Coskun, E İdil, R Nogaylar, A HACIMUFTUOGLU, M Arif, S Shoaie, C Zhang, J Nielsen, H Turkez, J Borén, M Uhlen, A Mardinoglu
Network Analyses Links Epicardial Fat Metabolism to Human Coronary Heart Disease
SneakPeek CellPress
S Doran, M Arif, M Clausen, J Wikström, M Bohlooly-Y, A Jeppsson, M Levin, A Mardinoglu, J Boren

2020

Integration of molecular profiles in a longitudinal wellness profiling cohort
Nature Communications
A Tebani, A Gummesson, W Zhong, IS Koistinen, T Lakshmikanth, LM Olsson, F Boulund, M Neiman, H Stenlund, C Hellström, MJ Karlsson, M Arif, T Dodig-Crnković, A Mardinoglu, S Lee, C Zhang, Y Chen, A Olin, J Mikes, H Danielsson, K Feilitzen, PA Jansson, O Angerås, M Huss, S Kjellqvist, J Odeberg, F Edfors, V Tremaroli, B Forsström, JM Schwenk, P Nilsson, T Moritz, F Bäckhed, L Engstrand, P Brodin, G Bergström, M Uhlen, L Fagerberg
Skeletal Muscle Transcriptomic Comparison between Long-Term Trained and Untrained Men and Women
Cell Reports
M Chapman, M Arif, E B Emanuelsson, S M Reitzner, M E Lindholm, A Mardinoglu, C J Sundberg
The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non‐alcoholic fatty liver disease
Molecular Systems Biology
C Zhang*, E Bjornson*, M Arif*, A Tebani, A Lovric, R Benfeitas, M Ozcan, K Juszczak, W Kim, JT Kim, G Bidkhori, M Ståhlman, PO Bergh, M Adiels, H Turkez, MR Taskinen, J Bosley, HU Marschall, J Nielsen, M Uhlén, J Borén, A Mardinoglu
Classification of clear cell renal cell carcinoma based on PKM alternative splicing
Heliyon
X Li, B Turanli, K Juszczak, W Kim, M Arif, Y Sato, S Ogawa, H Turkez, J Nielsen, J Boren, M Uhlen, C Zhang, A Mardinoglu
Boosting Natural Killer Cell-Mediated Targeting of Sarcoma Through DNAM-1 and NKG2D
Frontiers in Immunology
EC Sayitoglu, AM Georgoudaki, M Chrobok, D Ozkazanc, BJ Josey, M Arif, K Kusser, M Hartman, TM Chinn, R Potens, C Pamukcu, R Krueger, C Zhang, A Mardinoglu, E Alici, HT Temple, T Sutlu, AD Duru

2019

Cardiac expression of the microsomal triglyceride transport protein protects the heart function during ischemia
Journal of molecular and cellular cardiology
M Klevstig, M Arif, M Mannila, S Svedlund, I Mardani, M Ståhlman, L Andersson, M Lindbom, A Miljanovic, A Franco-Cereceda, P Eriksson, A Jeppsson, LM Gan, M Levin, A Mardinoglu, E Ehrenborg, J Borén
Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function
Metabolic engineering
Z Liu, C Zhang, S Lee, W Kim, M Klevstig, AM Harzandi, N Sikanic, M Arif, M Ståhlman, J Nielsen, M Uhlen, J Boren, A Mardinoglu
Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis
EBioMedicine
R Benfeitas, G Bidkhori, B Mukhopadhyay, M Klevstig, M Arif, C Zhang, S Lee, R Cinar, J Nielsen, M Uhlen, J Boren, G Kunos, A Mardinoglu
Elucidating the reprograming of colorectal cancer metabolism using genome-scale metabolic modeling
Frontiers in oncology
C Zhang, M Aldrees, M Arif, X Li, A Mardinoglu, M Aziz

2018

Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome
Scientific reports
A Lovric, M Granér, E Bjornson, M Arif, R Benfeitas, K Nyman, M Ståhlman, MO Pentikäinen, J Lundbom, A Hakkarainen, R Sirén, MS Nieminen, N Lundbom, K Lauerma, MR Taskinen, A Mardinoglu, J Boren
ESS: a tool for genome-scale quantification of essentiality score for reaction/genes in constraint-based modeling
Frontiers in physiology
C Zhang, S Lee, R Benfeitas, G Bidkhori, M Arif, A Mardinoglu
Metabolic network-based identification and prioritization of anti-cancer targets based on expression data in hepatocellular carcinoma
Frontiers in physiology
G Bidkhori, R Benfeitas, E Elmas, MN Kararoudi, M Arif, M Uhlen, J Nielsen, A Mardinoglu
TCSBN: a database of tissue and cancer specific biological networks
Nucleic acids research
S Lee*, C Zhang*, M Arif*, Z Liu, R Benfeitas, G Bidkhori, S Deshmukh, MA Shobky, A Lovric, J Boren, J Nielsen, M Uhlen, A Mardinoglu

2017

A pathology atlas of the human cancer transcriptome
Science
M Uhlen, C Zhang, S Lee, E Sjöstedt, L Fagerberg, G Bidkhori, R Benfeitas, M Arif, Z Liu, F Edfors, K Sanli, K Feilitzen, P Oksvold, E Lundberg, S Hober, P Nilsson, J Mattsson, JM Schwenk, H Brunnström, B Glimelius, T Sjöblom, PH Edqvist, D Djureinovic, P Micke, C Lindskog, A Mardinoglu, F Ponten

2016

Scalable 5-Tuple Packet Classification in Overlay Network-Based SDN
KTH Master Thesis Project
M Arif (Supervisors: Dr. Viktoria Fodor (KTH) and Dr. Albert Cabellos(UPC))

Contact

Thank you for visiting my website!

If you have any questions, suggestions, proposal for collaboration, teaching request, or anything, feel free to reach me through my social media or drop me an email (like the good ol' days)